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ABOUT THIS RECORD
ID:
MNEST041149
species:
Theobroma cacao
miRNA family:
MIR399
source:
miRBase, original name:
tcc-MIR399d
(
MI0017522
)
Taxonomy by NCBI:
Theobroma cacao
Theobroma
Byttnerioideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCCAAAGGAGATTTGCCCGG
miRNA*
TTACAGGGCAAAGATCTCCATTGGCAGG
mismatches:
2
bulges:
2
View larger
pre-miRNA
TCTCTGGTGCAGTTGCA
TTACAGGGCAAAGATCTCCATTGGCAGG
CTGCCACTTTGGGTCACGAACCGAATTATGTGTTCCTATAGTGTGTCTTC
TGCCA
AAGGAGATTTGCCCGG
CAATTCTTCCGCATTGATAT
dot-bracket secondary structure
.....(((((((((((.
.....(((((..(((((((.((((((((
..((((((.((((.((((..........))))..)))).)))).))..))
)))))
).)))))))))))).)
))))).....))))).....
SIMILARITIES
miRBase
csi-MIR399a
:
0.0000000000005
PMRD
vvi-miR399e
:
0.000000000002
microPC
miR399
:
0.000007
UniProt
no hits
RFAM
mir-399: 0.00000000003
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal,
Nat Genet. 43:101-108(2011).
,
"The genome of Theobroma cacao"