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ABOUT THIS RECORD
ID:
MNEST041151
species:
Theobroma cacao
miRNA family:
MIR399
source:
miRBase, original name:
tcc-MIR399f
(
MI0017524
)
Taxonomy by NCBI:
Theobroma cacao
Theobroma
Byttnerioideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCCAGAGGAGATTTGCCCTG
miRNA*
GAGCAATTCTCCTTCAGCACA
mismatches:
4
bulges:
0
View larger
pre-miRNA
TGTGGAGTTGAGGAATTACA
GAGCAATTCTCCTTCAGCACA
AATGCTTATGCTCCTTCATAGTTCTATTT
TGCCAGAGGAGATTTGCCCTG
CCATTCACT
CACACAATGAT
dot-bracket secondary structure
((((((((....((((..((
(.((((.(((((((..(((.(
((((.(((((......)))))...)))))
)))..))))))).)))).)))
..)))))))
).)))).....
SIMILARITIES
miRBase
ghr-MIR399d
:
0.000000000006
PMRD
vvi-miR399h
:
0.000001
microPC
miR399
:
0.00002
UniProt
no hits
RFAM
mir-399: 4e-16
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal,
Nat Genet. 43:101-108(2011).
,
"The genome of Theobroma cacao"