ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR399
source: miRBase, original name: tcc-MIR399g (MI0017525)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAATTGCCCTG miRNA* GTGCAGTCCTTCTTTGGCACA mismatches: 2 bulges: 0 |
pre-miRNA
TGTGCAGTTGACGAATAACAGTGCAGTCCTTCTTTGGCACAGAGAAGACATGGCATACGTGACTTCTGTTTTGCCAAAGGAGAATTGCCCTGCCATTCAT
TCCTGCAGTTAC
dot-bracket secondary structure
..(((((..((.((((..(((.(((((.(((((((((((.(.(((((.((((.....)))).))))).)..))))))))))).))))).)))..)))).)
).))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
TGTGCAGTTGACGAATAACAGTGCAGTCCTTCTTTGGCACAGAGAAGACATGGCATACGTGACTTCTGTTTTGCCAAAGGAGAATTGCCCTGCCATTCAT
TCCTGCAGTTAC
dot-bracket secondary structure
..(((((..((.((((..(((.(((((.(((((((((((.(.(((((.((((.....)))).))))).)..))))))))))).))))).)))..)))).)
).))))).....
SIMILARITIES| miRBase vvi-MIR399h: 0.00000000000002 PMRD vvi-miR399h: 0.00000000000002 microPC miR399: 0.000001 | UniProt no hits RFAM mir-399: 0.0000000000004 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
