ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR403
source: miRBase, original name: tcc-MIR403a (MI0017528)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAGATTCACGCACAAACTCG miRNA* GGTTTGTGCGTGAATTTAATA mismatches: 2 bulges: 0 |
pre-miRNA
AAAGGAGGAGGCAGATTTCAGGTTTGTGCGTGAATTTAATAAAACCGTAAGCCACAAAAATCTGGAAGGTGGATTTAGTTTCATGTTAGATTCACGCACA
AACTCGTAATCTGTCTTTTCATTCTT
dot-bracket secondary structure
....(((((((((((((.(..((((((((((((((((((((((((..((((((((.............)))).))))))))..)))))))))))))))))
)))..).)))))))))))))......
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
AAAGGAGGAGGCAGATTTCAGGTTTGTGCGTGAATTTAATAAAACCGTAAGCCACAAAAATCTGGAAGGTGGATTTAGTTTCATGTTAGATTCACGCACA
AACTCGTAATCTGTCTTTTCATTCTT
dot-bracket secondary structure
....(((((((((((((.(..((((((((((((((((((((((((..((((((((.............)))).))))))))..)))))))))))))))))
)))..).)))))))))))))......
SIMILARITIES| miRBase aly-MIR403: 0.0000000000004 PMRD bst-miR403: 0.0000000000004 microPC miR403: 0.000002 | UniProt no hits RFAM MIR403: 0.000000002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
