ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR403
source: miRBase, original name: tcc-MIR403b (MI0017529)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAGATTCACGCACAAACTCG miRNA* AGTTTGTGCCTGGATCAGACG mismatches: 3 bulges: 0 |
pre-miRNA
AGTAGATGGGACACATCTCCAGTTTGTGCCTGGATCAGACGCCATCAAGGCCGTCAATTTTTCAATCATGCCATCGATGGTGTTAGATTCACGCACAAAC
TCGTGATCTGTCTCCTCTTGGAA
dot-bracket secondary structure
...(((.((((((.(((.(.(((((((((.((((((.(((((((((..(((..................)))...))))))))).)))))).))))))))
).).))).)))))).))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
AGTAGATGGGACACATCTCCAGTTTGTGCCTGGATCAGACGCCATCAAGGCCGTCAATTTTTCAATCATGCCATCGATGGTGTTAGATTCACGCACAAAC
TCGTGATCTGTCTCCTCTTGGAA
dot-bracket secondary structure
...(((.((((((.(((.(.(((((((((.((((((.(((((((((..(((..................)))...))))))))).)))))).))))))))
).).))).)))))).))).....
SIMILARITIES| miRBase rco-MIR403b: 0.00000000003 PMRD vvi-miR403d: 0.0000000001 microPC miR403: 0.000002 | UniProt no hits RFAM MIR403: 0.0000000000005 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
