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ABOUT THIS RECORD
ID:
MNEST041157
species:
Theobroma cacao
miRNA family:
MIR530
source:
miRBase, original name:
tcc-MIR530a
(
MI0017530
)
Taxonomy by NCBI:
Theobroma cacao
Theobroma
Byttnerioideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCATTTGCACCTGCACCTC
miRNA*
GGTGCAGATGCAGGTGCAGA
mismatches:
1
bulges:
0
View larger
pre-miRNA
CCAACAAGTCTCCATTTATC
TGCATTTGCACCTGCACCTC
TTTCTCTACACTTCCAGCAGCCAGGGAGATGAACAACATTCTCCATGGACGGTTGCCGAA
ATCTTGTTGGTTGGACGGGGAGA
GGTGCAGATGCAGGTGCAGA
CAAATGGCCTCTTGGTTTTA
dot-bracket secondary structure
....((((...((((((.((
((((((((((.(((((((((
(..((...((...((((((.(((.(((((((.....)).))))).))).(((...)))..
....)))))).))...))..)))
))))))).))))))))))))
.))))))...))))......
SIMILARITIES
miRBase
ptc-MIR530a
:
0.0000005
PMRD
ptc-miRf11026-akr
:
0.0000005
microPC
miR1030
:
0.0001
UniProt
no hits
RFAM
MIR530: 0.0000006
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal,
Nat Genet. 43:101-108(2011).
,
"The genome of Theobroma cacao"