ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR530
source: miRBase, original name: tcc-MIR530b (MI0017531)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCATTTGCACCTGCACCTT miRNA* GGTGCAGGGGCAGCTGCAGG mismatches: 2 bulges: 0 |
pre-miRNA
GCTAAGATGTAGCCTTTATCTGCATTTGCACCTGCACCTTCTTGTTTTTATTTGGTTCACTTCAGCACCCTTCTGCTTTAGAAACCAAAGCTTGGGCAGA
TGTGTTTGTGGTGGAGGAAGATAAGGGCCAAGCAAAGAGGTGCAGGGGCAGCTGCAGGTGAATGCCATTTTGGCTTCT
dot-bracket secondary structure
(((((((((..((.((((((((((.((((.(((((((((((((((((((((((..((((((.((((((...((((((..((.........))..))))))
.))).))).))))))...))))))))).))))....)))))))))).)))).)))))))))).)))))))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
GCTAAGATGTAGCCTTTATCTGCATTTGCACCTGCACCTTCTTGTTTTTATTTGGTTCACTTCAGCACCCTTCTGCTTTAGAAACCAAAGCTTGGGCAGA
TGTGTTTGTGGTGGAGGAAGATAAGGGCCAAGCAAAGAGGTGCAGGGGCAGCTGCAGGTGAATGCCATTTTGGCTTCT
dot-bracket secondary structure
(((((((((..((.((((((((((.((((.(((((((((((((((((((((((..((((((.((((((...((((((..((.........))..))))))
.))).))).))))))...))))))))).))))....)))))))))).)))).)))))))))).)))))))))))....
SIMILARITIES| miRBase ptc-MIR530a: 0.0000000006 PMRD ptc-miRf11025-akr: 0.0000000006 microPC miR1030: 0.00004 | UniProt no hits RFAM MIR530: 0.0000000007 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
