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ABOUT THIS RECORD
ID:
MNEST041160
species:
Theobroma cacao
miRNA family:
MIR827
source:
miRBase, original name:
tcc-MIR827
(
MI0017533
)
Taxonomy by NCBI:
Theobroma cacao
Theobroma
Byttnerioideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTAGATGACCATCAACAAACA
miRNA*
TTTGTTGATGGTCATCTTGTC
mismatches:
2
bulges:
0
View larger
pre-miRNA
AAATTATGCATTATTGAATATG
TTTGTTGATGGTCATCTTGTC
ATTTTTTCACCTCTTCTTGGCCTTGTACCAGTTGCCAGTACCAAGTTCGTGTGCAGA
ATGATGC
TTAGATGACCATCAACAAACA
CTTTCATCGTTTTGCATTCT
dot-bracket secondary structure
.....(((((..((((((..((
(((((((((((((((((.(((
(((((..(((.....(((((.((.(((.....))).))..))))).....))).)))
)))))..
..)))))))))))))))))))
..))))..))..)))))...
SIMILARITIES
miRBase
ghr-MIR827b
:
0.0000001
PMRD
ath-miR827
:
0.0000001
microPC
miR827
:
0.000002
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal,
Nat Genet. 43:101-108(2011).
,
"The genome of Theobroma cacao"