ABOUT THIS RECORDspecies: Aquilegia caerulea
miRNA family: MIR166
source: miRBase, original name: aqc-MIR166d (MI0012077)
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCTC miRNA* GGAATGGAGTTGGTGTGTGT mismatches: 3 bulges: 1 |
pre-miRNA
GAGTGGAATGGAGTTGGTGTGTGTGGCTAGCTACCTGCTGGTAGAGATGTTAGGAGGAATGTTGTTTGGCTCGAAGCTTTAGAACCTTTTGTGTTCAATG
CATATCGGACCAGGCTTCATTCCTCTCAA
dot-bracket secondary structure
(((.((((((((((((((.((((((((((((.....))))))...((...(((((((..((..((((......))))..))...)))))))...))....
)))).)).)))).)))))))))).)))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Puzey JR, Kramer EM, Gene. 448:46-56(2009)., "Identification of conserved Aquilegia coerulea microRNAs and their targets"
GAGTGGAATGGAGTTGGTGTGTGTGGCTAGCTACCTGCTGGTAGAGATGTTAGGAGGAATGTTGTTTGGCTCGAAGCTTTAGAACCTTTTGTGTTCAATG
CATATCGGACCAGGCTTCATTCCTCTCAA
dot-bracket secondary structure
(((.((((((((((((((.((((((((((((.....))))))...((...(((((((..((..((((......))))..))...)))))))...))....
)))).)).)))).)))))))))).)))..
SIMILARITIES| miRBase vvi-MIR166b: 0.0000004 PMRD aqc-miR166d: 3e-69 microPC miR166: 0.0001 | UniProt no hits RFAM mir-166: 0.000007 |
Identical with: aqc-miR166d from PMRD (MNEST046869) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Puzey JR, Kramer EM, Gene. 448:46-56(2009)., "Identification of conserved Aquilegia coerulea microRNAs and their targets"
