ABOUT THIS RECORDspecies: Aquilegia caerulea
miRNA family: MIR477
source: miRBase, original name: aqc-MIR477e (MI0012102)
SEQUENCE & STRUCTURE| miRNA CTCTCCCTCAAGGGCTTCTA miRNA* GAAGAACTTGAGGGAGAATG mismatches: 3 bulges: 0 |
pre-miRNA
TTGATCACTCTCCCTCAAGGGCTTCTATTAGTCATGTAGAGAATTCTTATGTAACTAGAAGAACTTGAGGGAGAATGAACAAAC
dot-bracket secondary structure
(((.(((.(((((((((((..((((((.....((((.((......))))))....))))))..))))))))))).))).)))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Puzey JR, Kramer EM, Gene. 448:46-56(2009)., "Identification of conserved Aquilegia coerulea microRNAs and their targets"
TTGATCACTCTCCCTCAAGGGCTTCTATTAGTCATGTAGAGAATTCTTATGTAACTAGAAGAACTTGAGGGAGAATGAACAAAC
dot-bracket secondary structure
(((.(((.(((((((((((..((((((.....((((.((......))))))....))))))..))))))))))).))).)))..
SIMILARITIES| miRBase aqc-MIR477g: 3e-28 PMRD aqc-miR477e: 2e-42 microPC no hits | UniProt no hits RFAM MIR473: 0.00007 |
Identical with: aqc-miR477e from PMRD (MNEST046897) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Puzey JR, Kramer EM, Gene. 448:46-56(2009)., "Identification of conserved Aquilegia coerulea microRNAs and their targets"
