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ABOUT THIS RECORD

ID: MNEST041214
species: Citrus reticulata
miRNA family: MIR166
source: miRBase, original name: crt-MIR166b (MI0013311)

Taxonomy by NCBI:
Citrus reticulata Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCCTT

miRNA*
 GGGACTGTTGTCTGGCTCGATG

mismatches: 5
bulges: 0
View larger
pre-miRNA
 TATATGTTCTCATCTGGGTTAGCTTAGGGTTTTGAGAGCAGGAAGCCATGAAAGTCGATGGATGGGAGAAAAATGATTGTTTCTGAGGGGACTGTTGTCT
GGCTCGATGCATTAATAATAATTATAATTATATAATTATAATTATCATGAAAAAAGGGTATCGGACCAGGCTTCATTCCCTTCAGAATCAAATTCATTGT
TT

dot-bracket secondary structure
......(((((((((..((..((((..((((((........))))))....))))..)))))))))))...((((((((.(((((((((((.((..((((
((..((((((....((.((((((((((((....)))))))))))).)).........))))))..))))))..)).))))))))))).)))..)))))..
..


SIMILARITIES
miRBase csi-MIR166d: 5e-23

PMRD ath-miR166b: 0.000003

microPC miR166: 0.0002		UniProt no hits

RFAM mir-166: 0.00005

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Song C, Fang J, Li X, Liu H, Thomas Chao C, Planta. 230:671-685(2009)., "Identification and characterization of 27 conserved microRNAs in citrus"



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