ABOUT THIS RECORDspecies: Citrus reticulata
miRNA family: MIR168
source: miRBase, original name: crt-MIR168 (MI0013312)
Taxonomy by NCBI:
Citrus reticulata Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAA miRNA* CCCGCCTTGCATCAACTGAAT mismatches: 3 bulges: 0 |
pre-miRNA
AGTTACCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTGGCTAGTTTTTTTTTGAAATTTTTTGACAGCGAGGTGGCGTGTTGTAATTGGT
CGTCACGTTTAAATTAATGATTGAAAAAAATGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGAGGTGAGAGATTGGATGGATATTTACCT
T
dot-bracket secondary structure
..(((((..(((((((..(((((.((((((((((.(((((.(..(((.((....(((((((..(.(((..((...((((.(..(((............))
)..).))))..))..)))..)..))))))).)).)))..).))))).)))))))))).)))))..))))))).)))))......................
.
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Song C, Fang J, Li X, Liu H, Thomas Chao C, Planta. 230:671-685(2009)., "Identification and characterization of 27 conserved microRNAs in citrus"
AGTTACCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTGGCTAGTTTTTTTTTGAAATTTTTTGACAGCGAGGTGGCGTGTTGTAATTGGT
CGTCACGTTTAAATTAATGATTGAAAAAAATGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGAGGTGAGAGATTGGATGGATATTTACCT
T
dot-bracket secondary structure
..(((((..(((((((..(((((.((((((((((.(((((.(..(((.((....(((((((..(.(((..((...((((.(..(((............))
)..).))))..))..)))..)..))))))).)).)))..).))))).)))))))))).)))))..))))))).)))))......................
.
SIMILARITIES| miRBase ccl-MIR168: 2e-50 PMRD rco-miR168: 3e-21 microPC miR168: 1e-32 | UniProt no hits RFAM MIR168: 6e-20 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Song C, Fang J, Li X, Liu H, Thomas Chao C, Planta. 230:671-685(2009)., "Identification and characterization of 27 conserved microRNAs in citrus"
