miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST041216
species: Citrus reticulata
miRNA family: MIR171
source: miRBase, original name: crt-MIR171 (MI0013313)

Taxonomy by NCBI:
Citrus reticulata Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGATTGAGCCGTGCCAATATC

miRNA*
 TATTGGTGCGGTTCAATAAGA

mismatches: 3
bulges: 0
View larger
pre-miRNA
 AATATGACAGGAATATGCAGGATGCTGGAATCTTGTTTCCTATCTTTTGGGGGTTAAAATGAAGATTGTGGTGACCATTTTGGAGGATGGATGGGTACAA
CGGGATATTGGTGCGGTTCAATAAGAAAACGGTGCTCAATACTTTTTGAGCTCCGCTTTTTGATTGAGCCGTGCCAATATCACGTGCCACTCGCTCTCTA
A

dot-bracket secondary structure
.....((.(((((...(((((((......)))))))))))).)).......(((((..(..(...)..)..)))))...((((((..((..(((.....(
((.((((((((..(((((((((.(((((.(((.((((((......)))))).))).))))).)))))))))..)))))))).))).)))..))..)))))
)


SIMILARITIES
miRBase ccl-MIR171: 4e-76

PMRD vvi-miR171c: 8e-22

microPC miR171: 1e-39		UniProt no hits

RFAM MIR171_1: 2e-22

Identical with: miR171 from microPC (MNEST046797)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references
[1] Song C, Fang J, Li X, Liu H, Thomas Chao C, Planta. 230:671-685(2009)., "Identification and characterization of 27 conserved microRNAs in citrus"



Liczniki na strone;