ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR156
source: miRBase, original name: csi-MIR156 (MI0016691)
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCAC miRNA* GCTCGCTCCTCTTCTGTCAGC mismatches: 0 bulges: 1 |
pre-miRNA
CGAGAGAGCTACTGACAGAAGAGAGTGAGCACACGCAGGTAATTGTATTAGAAAATATCTTTGCAGGTGCGTGCTCGCTCCTCTTCTGTCAGCGTCATTT
TTG
dot-bracket secondary structure
((((((.(...(((((((((((((((((((((.(((..((((..(((((....)))))..))))..))).))))))))).))))))))))))...).)))
)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
CGAGAGAGCTACTGACAGAAGAGAGTGAGCACACGCAGGTAATTGTATTAGAAAATATCTTTGCAGGTGCGTGCTCGCTCCTCTTCTGTCAGCGTCATTT
TTG
dot-bracket secondary structure
((((((.(...(((((((((((((((((((((.(((..((((..(((((....)))))..))))..))).))))))))).))))))))))))...).)))
)))
SIMILARITIES| miRBase ctr-MIR156: 9e-54 PMRD cpt-miR156a: 1e-52 microPC miR156: 0.000000005 | UniProt no hits RFAM mir-156: 0.00000000002 |
Identical with: ctr-MIR156 from miRBase (MNEST041277) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
