ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR159
source: miRBase, original name: csi-MIR159 (MI0016693)
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCTA miRNA* GAGCTCCTTGAAGTCCAAAAG mismatches: 2 bulges: 0 |
pre-miRNA
GGGTTAAGGAGTGGAGCTCCTTGAAGTCCAAAAGAGGTTCTAGCAAGGGTAAATTGAGCTGCTGAGCTATGGATCCCACAGTCCTATGTATCAGATTTTA
GGGTTTGTTTCTGATGATGGTGATGATAGGCTTGTGGCTTGCATATTTCTGGACCTTCATTACCCCTTAAGTTTTTACCCCTTTTTTTGGATTGAAGGGA
GCTCTACCTCTCTACC
dot-bracket secondary structure
.(((..((..((((((((((((..((((((((((((((...((((((((..(((.(((.(.(.(((.((((.(..((((((.(((((.(((((....(((
(((.....))))))...)))))...))))).))))))..).)))).))).).).))).)))..)))))..)))...)))...)))))))))))..)))))
)))))))..))..)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
GGGTTAAGGAGTGGAGCTCCTTGAAGTCCAAAAGAGGTTCTAGCAAGGGTAAATTGAGCTGCTGAGCTATGGATCCCACAGTCCTATGTATCAGATTTTA
GGGTTTGTTTCTGATGATGGTGATGATAGGCTTGTGGCTTGCATATTTCTGGACCTTCATTACCCCTTAAGTTTTTACCCCTTTTTTTGGATTGAAGGGA
GCTCTACCTCTCTACC
dot-bracket secondary structure
.(((..((..((((((((((((..((((((((((((((...((((((((..(((.(((.(.(.(((.((((.(..((((((.(((((.(((((....(((
(((.....))))))...)))))...))))).))))))..).)))).))).).).))).)))..)))))..)))...)))...)))))))))))..)))))
)))))))..))..)))
SIMILARITIES| miRBase rco-MIR159: 5e-20 PMRD ptc-miRf10271-akr: 5e-17 microPC miR159: 9e-96 | UniProt no hits RFAM MIR159: 2e-20 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
