ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR160
source: miRBase, original name: csi-MIR160 (MI0013294)
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCCTGGCTCCCTGTATGCCAT miRNA* GGCGTATGAGGAGCCATGCAT mismatches: 3 bulges: 0 |
pre-miRNA
ATTATACCTATGTCTATATATTTATAATTATGTGCCTGGCTCCCTGTATGCCATTTGCAGAGTCAATCGAAACATCGATGGCCTCCGTGGATGGCGTATG
AGGAGCCATGCATATTCCATGTATAATATATACCCATAGATAT
dot-bracket secondary structure
.......(((((..((((((((((((...((((((.(((((((..((((((((((..(.((((((.((((....))))))).))).)..)))))))))).
.))))))).))))))....)))).))))))))..)))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern, RACE, Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
[2] Song C, Fang J, Li X, Liu H, Thomas Chao C, Planta. 230:671-685(2009)., "Identification and characterization of 27 conserved microRNAs in citrus"
ATTATACCTATGTCTATATATTTATAATTATGTGCCTGGCTCCCTGTATGCCATTTGCAGAGTCAATCGAAACATCGATGGCCTCCGTGGATGGCGTATG
AGGAGCCATGCATATTCCATGTATAATATATACCCATAGATAT
dot-bracket secondary structure
.......(((((..((((((((((((...((((((.(((((((..((((((((((..(.((((((.((((....))))))).))).)..)))))))))).
.))))))).))))))....)))).))))))))..)))))....
SIMILARITIES| miRBase ptc-MIR160b: 6e-31 PMRD ptc-miR160b: 6e-31 microPC miR160: 6e-28 | UniProt no hits RFAM mir-160: 7e-28 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern, RACE, Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
[2] Song C, Fang J, Li X, Liu H, Thomas Chao C, Planta. 230:671-685(2009)., "Identification and characterization of 27 conserved microRNAs in citrus"
