ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR162
source: miRBase, original name: csi-MIR162 (MI0013314)
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCAG miRNA* GGAGGCAGCGGTTCATCGATC mismatches: 3 bulges: 0 |
pre-miRNA
AAACTGTTTACACTGATCTGTGCTGCTGATAAATCTTAATTTTTTTTTTTGAATTTTTATTTAACAGAAAATAGAGAGAGTGAAGTCACTGGAGGCAGCG
GTTCATCGATCACTTTGTGCAAATTTTGTTGTGAAAAATAACACAAAATACATGAATCGATCGATAAACCTCTGCATCCAGCGCTCACTCCAACTCTATT
C
dot-bracket secondary structure
..........(((......)))...(((.(((((...(((((........)))))...))))).)))..(((((((.((((((.(.(.(((((.((((.(
(((.(((((((..((..((...(((((((.((........))))))))).))..))..))))))).)))).)))).))))).))))))))...)))))))
.
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
[2] Song C, Fang J, Li X, Liu H, Thomas Chao C, Planta. 230:671-685(2009)., "Identification and characterization of 27 conserved microRNAs in citrus"
AAACTGTTTACACTGATCTGTGCTGCTGATAAATCTTAATTTTTTTTTTTGAATTTTTATTTAACAGAAAATAGAGAGAGTGAAGTCACTGGAGGCAGCG
GTTCATCGATCACTTTGTGCAAATTTTGTTGTGAAAAATAACACAAAATACATGAATCGATCGATAAACCTCTGCATCCAGCGCTCACTCCAACTCTATT
C
dot-bracket secondary structure
..........(((......)))...(((.(((((...(((((........)))))...))))).)))..(((((((.((((((.(.(.(((((.((((.(
(((.(((((((..((..((...(((((((.((........))))))))).))..))..))))))).)))).)))).))))).))))))))...)))))))
.
SIMILARITIES| miRBase ghr-MIR162a: 1e-26 PMRD ghr-miR162a: 1e-26 microPC miR162: 2e-47 | UniProt no hits RFAM MIR162_2: 1e-17 |
Identical with: miR162 from microPC (MNEST046597) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
[2] Song C, Fang J, Li X, Liu H, Thomas Chao C, Planta. 230:671-685(2009)., "Identification and characterization of 27 conserved microRNAs in citrus"
