ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR166
source: miRBase, original name: csi-MIR166c (MI0016694)
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCC miRNA* GAATGTTGTCTGGTTCGAGA mismatches: 2 bulges: 0 |
pre-miRNA
TTCCTCCTCGATCATACATGAACGGTTGAGGGGAATGTTGTCTGGTTCGAGATCACTCGTGGACGAATTAATTAATAACTTATTGTCTTTTGAATGATTT
CGGACCAGGCTTCATTCCCCCCAACTCAGTTTAATTGC
dot-bracket secondary structure
..................((((((((((.((((((((..((((((((((((((((.(((.((((((................))))))..))).))))))
))))))))))..)))))))).)))))..))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
TTCCTCCTCGATCATACATGAACGGTTGAGGGGAATGTTGTCTGGTTCGAGATCACTCGTGGACGAATTAATTAATAACTTATTGTCTTTTGAATGATTT
CGGACCAGGCTTCATTCCCCCCAACTCAGTTTAATTGC
dot-bracket secondary structure
..................((((((((((.((((((((..((((((((((((((((.(((.((((((................))))))..))).))))))
))))))))))..)))))))).)))))..))))).....
SIMILARITIES| miRBase tcc-MIR166a: 0.000000000000002 PMRD ptc-miR166e: 0.0000000000001 microPC miR166: 0.000007 | UniProt no hits RFAM mir-166: 0.000000000009 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
