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ABOUT THIS RECORD

ID: MNEST041225
species: Citrus sinensis
miRNA family: MIR166
source: miRBase, original name: csi-MIR166d (MI0016695)

Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCCT

miRNA*
GGAATGTTGTTTGGCTCGAGG

mismatches: 5
bulges: 0

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pre-miRNA
TTATAATGAAAAAAGGGTATCGGACCAGGCTTCATTCCCTTCAGAATCAAATTCATTATTTGATCTTTTTGAGAGGTTATGGTTGATGGGAATGTTGTTT
GGCTCGAGG
GTCATCTAGGTTTTCAA


dot-bracket secondary structure
......((((((..((((.(((..((((((..(((((((.((((.(((((((.....)))))))(((.....))).......)))).)))))))..))))
))..)))..
...))))...)))))).



SIMILARITIES
miRBase crt-MIR166a: 4e-38

PMRD gma-miR166q: 0.000006

microPC miR166: 0.0001
UniProt no hits

RFAM mir-166: 0.0000001

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"




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