ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR166
source: miRBase, original name: csi-MIR166d (MI0016695)
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCT miRNA* GGAATGTTGTTTGGCTCGAGG mismatches: 5 bulges: 0 |
pre-miRNA
TTATAATGAAAAAAGGGTATCGGACCAGGCTTCATTCCCTTCAGAATCAAATTCATTATTTGATCTTTTTGAGAGGTTATGGTTGATGGGAATGTTGTTT
GGCTCGAGGGTCATCTAGGTTTTCAA
dot-bracket secondary structure
......((((((..((((.(((..((((((..(((((((.((((.(((((((.....)))))))(((.....))).......)))).)))))))..))))
))..))).....))))...)))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
TTATAATGAAAAAAGGGTATCGGACCAGGCTTCATTCCCTTCAGAATCAAATTCATTATTTGATCTTTTTGAGAGGTTATGGTTGATGGGAATGTTGTTT
GGCTCGAGGGTCATCTAGGTTTTCAA
dot-bracket secondary structure
......((((((..((((.(((..((((((..(((((((.((((.(((((((.....)))))))(((.....))).......)))).)))))))..))))
))..))).....))))...)))))).
SIMILARITIES| miRBase crt-MIR166a: 4e-38 PMRD gma-miR166q: 0.000006 microPC miR166: 0.0001 | UniProt no hits RFAM mir-166: 0.0000001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
