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ABOUT THIS RECORD

ID: MNEST041226
species: Citrus sinensis
miRNA family: MIR166
source: miRBase, original name: csi-MIR166e (MI0013296)

Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCCC

miRNA*
GGAATGTTGTCTGGCTCGAGG

mismatches: 4
bulges: 0

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pre-miRNA
GGGGAGCTTTTTGTTTTGAGGGGAATGTTGTCTGGCTCGAGGACACTACTTGTTGATCCATTAATTTTACGTATTCTCTCATAGATCTAGCATCTGAATG
GTGGATAACAATATACGGATTCAGCTTATTTGGCGTCGTCGGACCAGGCTTCATTCCCCCCAATATATTGCTTCTAT


dot-bracket secondary structure
.((((((....(((.(((.((((((((..((((((..(((.(((.(((...((((((((...........(........)....(((((.(((....)))
.)))))..........))).))))).....))).))).)))..))))))..)))))))).))).)))..))))))..



SIMILARITIES
miRBase ctr-MIR166: 0.0000000000002

PMRD cpt-miR166: 2e-87

microPC miR166: 5e-72
UniProt no hits

RFAM mir-166: 0.0000000002

Identical with: cpt-miR166 from PMRD (MNEST048427)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
[2] Song C, Fang J, Li X, Liu H, Thomas Chao C, Planta. 230:671-685(2009)., "Identification and characterization of 27 conserved microRNAs in citrus"




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