ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR166
source: miRBase, original name: csi-MIR166e (MI0013296)
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGCTCGAGG mismatches: 4 bulges: 0 |
pre-miRNA
GGGGAGCTTTTTGTTTTGAGGGGAATGTTGTCTGGCTCGAGGACACTACTTGTTGATCCATTAATTTTACGTATTCTCTCATAGATCTAGCATCTGAATG
GTGGATAACAATATACGGATTCAGCTTATTTGGCGTCGTCGGACCAGGCTTCATTCCCCCCAATATATTGCTTCTAT
dot-bracket secondary structure
.((((((....(((.(((.((((((((..((((((..(((.(((.(((...((((((((...........(........)....(((((.(((....)))
.)))))..........))).))))).....))).))).)))..))))))..)))))))).))).)))..))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
[2] Song C, Fang J, Li X, Liu H, Thomas Chao C, Planta. 230:671-685(2009)., "Identification and characterization of 27 conserved microRNAs in citrus"
GGGGAGCTTTTTGTTTTGAGGGGAATGTTGTCTGGCTCGAGGACACTACTTGTTGATCCATTAATTTTACGTATTCTCTCATAGATCTAGCATCTGAATG
GTGGATAACAATATACGGATTCAGCTTATTTGGCGTCGTCGGACCAGGCTTCATTCCCCCCAATATATTGCTTCTAT
dot-bracket secondary structure
.((((((....(((.(((.((((((((..((((((..(((.(((.(((...((((((((...........(........)....(((((.(((....)))
.)))))..........))).))))).....))).))).)))..))))))..)))))))).))).)))..))))))..
SIMILARITIES| miRBase ctr-MIR166: 0.0000000000002 PMRD cpt-miR166: 2e-87 microPC miR166: 5e-72 | UniProt no hits RFAM mir-166: 0.0000000002 |
Identical with: cpt-miR166 from PMRD (MNEST048427) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
[2] Song C, Fang J, Li X, Liu H, Thomas Chao C, Planta. 230:671-685(2009)., "Identification and characterization of 27 conserved microRNAs in citrus"
