ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR167
source: miRBase, original name: csi-MIR167a (MI0016740)
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GATCATCTGGCAGTTTCACC mismatches: 0 bulges: 1 |
pre-miRNA
GCACTAGTAGTAGTTGAAGCTGCCAGCATGATCTGAACTTTCCTTGACCTCCATCTCTAGGGAAAGGCCAGATCATCTGGCAGTTTCACCTATTGATGGT
AGC
dot-bracket secondary structure
((((((.((((((.((((((((((((.((((((((..((((((((((........)).))))))))..)))))))))))))))))))).)))))).))))
.))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
GCACTAGTAGTAGTTGAAGCTGCCAGCATGATCTGAACTTTCCTTGACCTCCATCTCTAGGGAAAGGCCAGATCATCTGGCAGTTTCACCTATTGATGGT
AGC
dot-bracket secondary structure
((((((.((((((.((((((((((((.((((((((..((((((((((........)).))))))))..)))))))))))))))))))).)))))).))))
.))
SIMILARITIES| miRBase ctr-MIR167: 9e-54 PMRD cle-miR167: 1e-49 microPC miR167: 2e-36 | UniProt no hits RFAM MIR167_1: 0.0000000000001 |
Identical with: ccl-MIR167a from miRBase (MNEST041208) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
