ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR167
source: miRBase, original name: csi-MIR167b (MI0016697)
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTT miRNA* AGATCATGCGGCAGTTTCACC mismatches: 0 bulges: 2 |
pre-miRNA
ATCGGGCACCACTATCAGATGAAGCTGCCAGCATGATCTTAACTTTCCTCCTTTGCTCGAGGAATGATACAGATCATGCGGCAGTTTCACCTGTTCGTTG
GTTGCACGAAATTACGAGTCCAG
dot-bracket secondary structure
.(((.(((((((...(((.((((((((((.(((((((((((.(.((((((........)))))).).)).))))))))))))))))))).)))...).))
).))).)))..............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
ATCGGGCACCACTATCAGATGAAGCTGCCAGCATGATCTTAACTTTCCTCCTTTGCTCGAGGAATGATACAGATCATGCGGCAGTTTCACCTGTTCGTTG
GTTGCACGAAATTACGAGTCCAG
dot-bracket secondary structure
.(((.(((((((...(((.((((((((((.(((((((((((.(.((((((........)))))).).)).))))))))))))))))))).)))...).))
).))).)))..............
SIMILARITIES| miRBase ptc-MIR167g: 7e-21 PMRD ptc-miR167g: 7e-21 microPC miR167: 0.0000000004 | UniProt no hits RFAM MIR167_1: 3e-20 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
