ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR171_1
source: miRBase, original name: csi-MIR171a (MI0016699)
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGCGCCAATATCAC miRNA* GATATTGGTGCGGTTCAATA mismatches: 1 bulges: 0 |
pre-miRNA
TACTCACGGGATATTGGTGCGGTTCAATAAGAAAACGGTGCTCAATACTTTTTGAGCTCCGCTTTTTGATTGAGCCGCGCCAATATCACGTGCCACT
dot-bracket secondary structure
....((((.(((((((((((((((((((.(((((.(((.((((((......)))))).))).))))).))))))))))))))))))).)))).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
TACTCACGGGATATTGGTGCGGTTCAATAAGAAAACGGTGCTCAATACTTTTTGAGCTCCGCTTTTTGATTGAGCCGCGCCAATATCACGTGCCACT
dot-bracket secondary structure
....((((.(((((((((((((((((((.(((((.(((.((((((......)))))).))).))))).))))))))))))))))))).)))).....
SIMILARITIES| miRBase ccl-MIR171: 3e-50 PMRD vvi-miR171c: 9e-20 microPC miR171: 1e-37 | UniProt no hits RFAM MIR171_1: 1e-19 |
Identical with: ccl-MIR171 from miRBase (MNEST041211) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
