ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR172
source: miRBase, original name: csi-MIR172a (MI0013302)
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCTTGATGATGCTGCA miRNA* CAGCGTCCTCAAGATTCACA mismatches: 3 bulges: 0 |
pre-miRNA
GTCACCTTAAAACAGTCGTTGCTCGCTGTAGCAGCGTCCTCAAGATTCACATCCAGTCTAAAGGCAAAAGCAGCAATTTTTCTTCATTTTTGCTTGCCTT
GGTTTTTGTCAGTGAGAATCTTGATGATGCTGCAACGGCGATTAATGACTAGCTACCAACAA
dot-bracket secondary structure
.............((((((((.(((((((.((((((((.(((((((((.(((.(((....((((((..(((((.(((........))).)))))))))))
.....)))...))).))))))))).)))))))).))))))).))))))))............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern, Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
[2] Song C, Fang J, Li X, Liu H, Thomas Chao C, Planta. 230:671-685(2009)., "Identification and characterization of 27 conserved microRNAs in citrus"
GTCACCTTAAAACAGTCGTTGCTCGCTGTAGCAGCGTCCTCAAGATTCACATCCAGTCTAAAGGCAAAAGCAGCAATTTTTCTTCATTTTTGCTTGCCTT
GGTTTTTGTCAGTGAGAATCTTGATGATGCTGCAACGGCGATTAATGACTAGCTACCAACAA
dot-bracket secondary structure
.............((((((((.(((((((.((((((((.(((((((((.(((.(((....((((((..(((((.(((........))).)))))))))))
.....)))...))).))))))))).)))))))).))))))).))))))))............
SIMILARITIES| miRBase csi-MIR172b: 9e-52 PMRD ptc-miRf11023-akr: 0.0000005 microPC miR172: 4e-54 | UniProt no hits RFAM mir-172: 0.000009 |
Identical with: miR172 from microPC (MNEST046108) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern, Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
[2] Song C, Fang J, Li X, Liu H, Thomas Chao C, Planta. 230:671-685(2009)., "Identification and characterization of 27 conserved microRNAs in citrus"
