ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR172
source: miRBase, original name: csi-MIR172b (MI0016700)
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCTTGATGATGCGGCAA miRNA* GCAGCGACGTCAAGATTCACA mismatches: 4 bulges: 0 |
pre-miRNA
TTGCTCGCTGTAGCAGCGACGTCAAGATTCACATCCAGTCTAAAGGCAAAAGCAGCAATTTTTCTTCAGTTTGGCTTGCCTGGGTTTTTGTCAGTGAGAA
TCTTGATGATGCGGCAACGGCGATGAA
dot-bracket secondary structure
....(((((((.((.(((.(((((((((((.(((.(((.....(((((..(((...((((.......))))..))))))))......)))...))).)))
)))))))).))).)).)))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
TTGCTCGCTGTAGCAGCGACGTCAAGATTCACATCCAGTCTAAAGGCAAAAGCAGCAATTTTTCTTCAGTTTGGCTTGCCTGGGTTTTTGTCAGTGAGAA
TCTTGATGATGCGGCAACGGCGATGAA
dot-bracket secondary structure
....(((((((.((.(((.(((((((((((.(((.(((.....(((((..(((...((((.......))))..))))))))......)))...))).)))
)))))))).))).)).)))))))....
SIMILARITIES| miRBase csi-MIR172a: 7e-52 PMRD ptc-miRf11023-akr: 0.0001 microPC miR172: 6e-40 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
