ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR319
source: miRBase, original name: csi-MIR319 (MI0016702)
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGACTGAAGGGAGCTCCT miRNA* GGGTTCCTTGCGGCCCAAAAC mismatches: 2 bulges: 0 |
pre-miRNA
TCGTCTCTTAATAAAATTGGCGAAAATGGTAGAAATAGGGGTTCCTTGCGGCCCAAAACAGTTGGCTAACTCTGCTCTTCTCTCTATGTTTTGGACTGAA
GGGAGCTCCTAATTCTTCTCTTT
dot-bracket secondary structure
(((((.............)))))....((.((((.((((((((((((.(((.((((((((...(((.......)))..........)))))))).))).)
))))))))))).)))).))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
TCGTCTCTTAATAAAATTGGCGAAAATGGTAGAAATAGGGGTTCCTTGCGGCCCAAAACAGTTGGCTAACTCTGCTCTTCTCTCTATGTTTTGGACTGAA
GGGAGCTCCTAATTCTTCTCTTT
dot-bracket secondary structure
(((((.............)))))....((.((((.((((((((((((.(((.((((((((...(((.......)))..........)))))))).))).)
))))))))))).)))).))....
SIMILARITIES| miRBase vvi-MIR319e: 0.0000000001 PMRD vvi-miR319e: 0.0000000001 microPC miR319: 0.000002 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
