ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR393
source: miRBase, original name: csi-MIR393 (MI0016703)
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATCCAAAGGGATCGCATTGATC miRNA* CGATGCTATCCCTCTGGATTC mismatches: 2 bulges: 1 |
pre-miRNA
TTCTGCAACTAGAGGATAAATCCAAAGGGATCGCATTGATCCTAAGCCTTAATTATAATTCCCATACTTAATATTCATTAGGACGATGCTATCCCTCTGG
ATTCCTCCTTCGGTAGCTCATATGTATATATATAATCTCTACATA
dot-bracket secondary structure
....((.((..(((((..((((((.((((((.((((((.((((((......((((.............)))).....)))))))))))).)))))).)))
)))..)))))..)).))...((((((.............))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
TTCTGCAACTAGAGGATAAATCCAAAGGGATCGCATTGATCCTAAGCCTTAATTATAATTCCCATACTTAATATTCATTAGGACGATGCTATCCCTCTGG
ATTCCTCCTTCGGTAGCTCATATGTATATATATAATCTCTACATA
dot-bracket secondary structure
....((.((..(((((..((((((.((((((.((((((.((((((......((((.............)))).....)))))))))))).)))))).)))
)))..)))))..)).))...((((((.............))))))
SIMILARITIES| miRBase aly-MIR393a: 0.000000002 PMRD ptc-miRf12019-akr: 0.0000001 microPC miR393: 0.000007 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
