ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR395
source: miRBase, original name: csi-MIR395 (MI0016705)
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGAAGTGTTTGGGGGAACTC miRNA* GTTCCTCCGATCACTTCATTG mismatches: 2 bulges: 0 |
pre-miRNA
ATGTCTCCGGGAGTTCCTCCGATCACTTCATTGGGGCTATATGATCATTTAGACAAAATTTGTCACCCCACTGAAGTGTTTGGGGGAACTCTGGGTGCCA
C
dot-bracket secondary structure
.((.(.((.(((((((((((((.(((((((.(((((.....(((....)))((((.....)))).))))).))))))).))))))))))))).)).).))
.
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
ATGTCTCCGGGAGTTCCTCCGATCACTTCATTGGGGCTATATGATCATTTAGACAAAATTTGTCACCCCACTGAAGTGTTTGGGGGAACTCTGGGTGCCA
C
dot-bracket secondary structure
.((.(.((.(((((((((((((.(((((((.(((((.....(((....)))((((.....)))).))))).))))))).))))))))))))).)).).))
.
SIMILARITIES| miRBase ptc-MIR395e: 0.000000001 PMRD ptc-miR395e: 0.000000001 microPC miR395: 0.00008 | UniProt no hits RFAM mir-395: 0.00000002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
