ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR396
source: miRBase, original name: csi-MIR396a (MI0016706)
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTG miRNA* ATTCAAGAAAGCTGTGGAAAA mismatches: 1 bulges: 0 |
pre-miRNA
CGAAGGTCCTCTTTGTGATCTTCCACAGCTTTCTTGAACTGTCTTGAATTTTCCGATCGATACCGGTGCATGATTAATTCCCAACACAATTCAAGAAAGC
TGTGGAAAACTACTAAGAGGATTTGGTCATCAATCTCTCTTTTGATAGAGATC
dot-bracket secondary structure
.((.(((((((((.(((.(.((((((((((((((((((.(((.(((......(((........))).....((.....)).))).))).)))))))))))
))))))).).))).)))))))))...)).......(((((......)))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
CGAAGGTCCTCTTTGTGATCTTCCACAGCTTTCTTGAACTGTCTTGAATTTTCCGATCGATACCGGTGCATGATTAATTCCCAACACAATTCAAGAAAGC
TGTGGAAAACTACTAAGAGGATTTGGTCATCAATCTCTCTTTTGATAGAGATC
dot-bracket secondary structure
.((.(((((((((.(((.(.((((((((((((((((((.(((.(((......(((........))).....((.....)).))).))).)))))))))))
))))))).).))).)))))))))...)).......(((((......)))))..
SIMILARITIES| miRBase zma-MIR396h: 0.00000000003 PMRD zma-miR396b: 0.00000000003 microPC miR396: 0.0000005 | UniProt no hits RFAM MIR396: 0.000000002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
