ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR399
source: miRBase, original name: csi-MIR399b (MI0016713)
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAGTTGCCCTA miRNA* GGGCTTCTCTCCTTTGGCAGG mismatches: 2 bulges: 0 |
pre-miRNA
GAAGCAGTAAGCGATTTAGTTGTAGGGCTTCTCTCCTTTGGCAGGTGATGGCCAAGGGCAAAGATCATATAATATATATTTATATGGTGCCTATTCTAAT
TATTGTTCTATTTTTTCAATGACCTGCCAAAGGAGAGTTGCCCTATAACTGCTTCAGCTTTTAAATAA
dot-bracket secondary structure
........((((((..((((((((((((..((((((((((((((((.((.(((...)))....(((((((((.......)))))))))............
..................)).))))))))))))))))..))))))))))))..)).))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
GAAGCAGTAAGCGATTTAGTTGTAGGGCTTCTCTCCTTTGGCAGGTGATGGCCAAGGGCAAAGATCATATAATATATATTTATATGGTGCCTATTCTAAT
TATTGTTCTATTTTTTCAATGACCTGCCAAAGGAGAGTTGCCCTATAACTGCTTCAGCTTTTAAATAA
dot-bracket secondary structure
........((((((..((((((((((((..((((((((((((((((.((.(((...)))....(((((((((.......)))))))))............
..................)).))))))))))))))))..))))))))))))..)).))))........
SIMILARITIES| miRBase tcc-MIR399a: 0.0000000001 PMRD ath-miRf10988-akr: 0.00000003 microPC miR399: 0.0005 | UniProt no hits RFAM mir-399: 0.00001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
