ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR399
source: miRBase, original name: csi-MIR399c (MI0016710)
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAATTGCCCTG miRNA* GTGCAGTCCTCCTTTGGCGTG mismatches: 2 bulges: 0 |
pre-miRNA
TCAATACAAAGTGACAATGTGGTTGAGGAATAACAGTGCAGTCCTCCTTTGGCGTGCAGATTGCAAAGAGATAATGCATATTATTTCATTCATTTGCATC
CTTCTGTTTGCCAAAGGAGAATTGCCCTGCCATTCACTCTCGCAGCTAG
dot-bracket secondary structure
.................(((((..(((((((..(((.(((((.(((((((((((.(((((.((((((((((((((....)))))))).....))))))..
..))))).))))))))))).))))).)))..)))).)))))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
TCAATACAAAGTGACAATGTGGTTGAGGAATAACAGTGCAGTCCTCCTTTGGCGTGCAGATTGCAAAGAGATAATGCATATTATTTCATTCATTTGCATC
CTTCTGTTTGCCAAAGGAGAATTGCCCTGCCATTCACTCTCGCAGCTAG
dot-bracket secondary structure
.................(((((..(((((((..(((.(((((.(((((((((((.(((((.((((((((((((((....)))))))).....))))))..
..))))).))))))))))).))))).)))..)))).)))))))).....
SIMILARITIES| miRBase csi-MIR399e: 1e-26 PMRD zma-miR399a: 0.0000000005 microPC miR399: 0.000007 | UniProt no hits RFAM mir-399: 0.000000009 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
