ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR403
source: miRBase, original name: csi-MIR403 (MI0016714)
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAGATTCACGCACAAACTCG miRNA* GGTTTGTGCGTGAATTTAATA mismatches: 0 bulges: 0 |
pre-miRNA
GAGGCATGTTTCGGGTTTGTGCGTGAATTTAATAAAATAACCGCTTCTTTTAATCTCGTTCCCCCATTTTTTGTTAGTAACAAATTTTTGCCGTCAGTGT
TAGATTCACGCACAAACTCGTGATGTGTCT
dot-bracket secondary structure
.(((((((((.(((((((((((((((((((((((...(.((.((.............(......)....(((((.....))))).....)).)).).)))
)))))))))))))))))))).)))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
GAGGCATGTTTCGGGTTTGTGCGTGAATTTAATAAAATAACCGCTTCTTTTAATCTCGTTCCCCCATTTTTTGTTAGTAACAAATTTTTGCCGTCAGTGT
TAGATTCACGCACAAACTCGTGATGTGTCT
dot-bracket secondary structure
.(((((((((.(((((((((((((((((((((((...(.((.((.............(......)....(((((.....))))).....)).)).).)))
)))))))))))))))))))).)))))))))
SIMILARITIES| miRBase tcc-MIR403b: 0.0000000004 PMRD vvi-miR403c: 0.00000003 microPC miR403: 3e-57 | UniProt no hits RFAM MIR403: 0.000000008 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
