ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR477
source: miRBase, original name: csi-MIR473 (MI0016717)
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTCTCCCTCAAGGGCTTCGC miRNA* GAAGTCCTTGGGGTTGAGTGA mismatches: 3 bulges: 0 |
pre-miRNA
CCAAAGCAGTAGAGTCGTTCACTCTCCCTCAAGGGCTTCGCCACAATCCAAATCATGCTGAACAGGTGGGTGGGTTGATGCTGAAGTCCTTGGGGTTGAG
TGATCGACGCCTGTTTTTTAACTCGCTAATGACGATCGCAGAAGACAACTCGAAGGCTA
dot-bracket secondary structure
....(((....((((((.((((((..((((((((((((((.(((((((((..((((.((....)))))).))))))).)).))))))))))))))..)))
))).))))...((((((((...((((....).)))....))))))))..))....))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
CCAAAGCAGTAGAGTCGTTCACTCTCCCTCAAGGGCTTCGCCACAATCCAAATCATGCTGAACAGGTGGGTGGGTTGATGCTGAAGTCCTTGGGGTTGAG
TGATCGACGCCTGTTTTTTAACTCGCTAATGACGATCGCAGAAGACAACTCGAAGGCTA
dot-bracket secondary structure
....(((....((((((.((((((..((((((((((((((.(((((((((..((((.((....)))))).))))))).)).))))))))))))))..)))
))).))))...((((((((...((((....).)))....))))))))..))....))).
SIMILARITIES| miRBase csi-MIR477b: 0.0000001 PMRD aqc-miR477g: 0.0001 microPC no hits | UniProt no hits RFAM MIR473: 0.0006 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
