ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR477
source: miRBase, original name: csi-MIR477a (MI0016718)
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACCTCCCTCGAAGGCTTCCAA miRNA* GGAAACCCTAGGGGGAGGTTG mismatches: 4 bulges: 0 |
pre-miRNA
AAAATGGAGAAGCTTCCAACCTCCCTCGAAGGCTTCCAATATACCATGCTTCCTCANATTGGCCTTGTAAGCATGGGAATGTTGGAAACCCTAGGGGGAG
GTTGAAAGCTTATGACTCCATTTAAATCAGTCTGTACGTG
dot-bracket secondary structure
.((((((((((((((.(((((((((((...((.(((((((((.((((((((((.......))......))))))))..))))))))).))...)))))))
)))).))))))....)))))))).................
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
AAAATGGAGAAGCTTCCAACCTCCCTCGAAGGCTTCCAATATACCATGCTTCCTCANATTGGCCTTGTAAGCATGGGAATGTTGGAAACCCTAGGGGGAG
GTTGAAAGCTTATGACTCCATTTAAATCAGTCTGTACGTG
dot-bracket secondary structure
.((((((((((((((.(((((((((((...((.(((((((((.((((((((((.......))......))))))))..))))))))).))...)))))))
)))).))))))....)))))))).................
SIMILARITIES| miRBase csi-MIR477c: 3e-73 PMRD ptc-miRf11216-akr: 0.00003 microPC no hits | UniProt no hits RFAM MIR477: 0.00003 |
Identical with: csi-MIR477c from miRBase (MNEST041257) |
MOREmiRNEST target predictions
non-miRNEST targets: none
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
