ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR477
source: miRBase, original name: csi-MIR477b (MI0016719)
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCTCCCTCAAGGGCTTCTCT miRNA* CTGAAGCCCTTAGGGCAGAGTG mismatches: 2 bulges: 3 |
pre-miRNA
CAAAAGCAATCGTCGTTCACTCTCCCTCAAGGGCTTCTCTTCGATCCATATATAACGTACATATGCTCAAATGAGTGGTGATGGATCGACGCTGAAGCCC
TTAGGGCAGAGTGATCGACTCCGGCTTTCTCATTTTCC
dot-bracket secondary structure
..(((((....((((.(((((((((((.(((((((((.(.(((((((((........(((....((((....)))).)))))))))))).)..)))))))
)))))).))))))).))))....)))))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
CAAAAGCAATCGTCGTTCACTCTCCCTCAAGGGCTTCTCTTCGATCCATATATAACGTACATATGCTCAAATGAGTGGTGATGGATCGACGCTGAAGCCC
TTAGGGCAGAGTGATCGACTCCGGCTTTCTCATTTTCC
dot-bracket secondary structure
..(((((....((((.(((((((((((.(((((((((.(.(((((((((........(((....((((....)))).)))))))))))).)..)))))))
)))))).))))))).))))....)))))..........
SIMILARITIES| miRBase csi-MIR473: 0.0000001 PMRD aqc-miR477g: 0.00003 microPC no hits | UniProt no hits RFAM MIR473: 0.0001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
