ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR482
source: miRBase, original name: csi-MIR482a (MI0016722)
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTCCCTATGCCTCCCATTCC miRNA* AGTGGGAGCGTGGGGTAAGAAG mismatches: 0 bulges: 2 |
pre-miRNA
AGGAAGTTTTGGGAGTGGGAGCGTGGGGTAAGAAGAGAAGAAAGCGTATAATTTTTCTTTTCTTTTTCAATTGAGAAAGAAAATTACAAATTCAATTTCT
TCCCTATGCCTCCCATTCCTATGATTTCC
dot-bracket secondary structure
.(((((((.(((((((((((((((((((.((((((..(((((((........)))))))(((((((((....)))))))))..............)))))
)))))))).)))))))))))).)))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
AGGAAGTTTTGGGAGTGGGAGCGTGGGGTAAGAAGAGAAGAAAGCGTATAATTTTTCTTTTCTTTTTCAATTGAGAAAGAAAATTACAAATTCAATTTCT
TCCCTATGCCTCCCATTCCTATGATTTCC
dot-bracket secondary structure
.(((((((.(((((((((((((((((((.((((((..(((((((........)))))))(((((((((....)))))))))..............)))))
)))))))).)))))))))))).)))))))
SIMILARITIES| miRBase gma-MIR482a: 0.000006 PMRD gma-miR482: 0.000006 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
