ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR530
source: miRBase, original name: csi-MIR530a (MI0016724)
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCATTTGCACCTGCACCTTG miRNA* AGGTGCAGCTGTATATGCAGG mismatches: 3 bulges: 0 |
pre-miRNA
GGCACGAGATTTTTCTGCATTTGCACCTGCACCTTGCTGTGCTGTTATCTGGGTTGACGAAGATCATCATGATGATCAGCTTCAAAACTCGAAAGCATGA
AGGTGCAGCTGTATATGCAGGTGAATGCC
dot-bracket secondary structure
((((.....(((.(((((((.((((.(((((((((.(.(((((....((.(((((((.(..((((((....))))))..).)))..)))))).)))))))
)))))))).)))).))))))).)))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
GGCACGAGATTTTTCTGCATTTGCACCTGCACCTTGCTGTGCTGTTATCTGGGTTGACGAAGATCATCATGATGATCAGCTTCAAAACTCGAAAGCATGA
AGGTGCAGCTGTATATGCAGGTGAATGCC
dot-bracket secondary structure
((((.....(((.(((((((.((((.(((((((((.(.(((((....((.(((((((.(..((((((....))))))..).)))..)))))).)))))))
)))))))).)))).))))))).)))))))
SIMILARITIES| miRBase ptc-MIR530a: 0.00002 PMRD ptc-miRf11026-akr: 0.00002 microPC miR1030: 0.00002 | UniProt no hits RFAM MIR530: 0.0001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
