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ABOUT THIS RECORD

ID: MNEST041297
species: Populus trichocarpa
miRNA family: MIR157
source: miRBase, original name: ptc-MIR156j (MI0002193)

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGACAGAAGATAGAGAGCAC

miRNA*
GCTCTCTATGCTTCTGTCATCA

mismatches: 1
bulges: 1

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pre-miRNA
GGTGATGTTGTTGACAGAAGATAGAGAGCACAGATGATGATATGCAATGGACTCTGCATCCCACTCCTTTGTGCTCTCTATGCTTCTGTCATCACTTTCA


dot-bracket secondary structure
(((((......(((((((((((((((((((((((.((((..(((((........)))))..)).)).)))))))))))))).))))))))))))))....



SIMILARITIES
miRBase ptc-MIR156i: 1e-31

PMRD ptc-miR156j: 5e-52

microPC miR157: 6e-27
UniProt no hits

RFAM no hits

Identical with: ptc-miR156j from PMRD (MNEST051600)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
[3] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"




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