ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR169
source: miRBase, original name: ptc-MIR169b (MI0002252)
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGA miRNA* GGCAGGTTGTTCTTGGCTACA mismatches: 3 bulges: 0 |
pre-miRNA
AAGATTGATGCAGCCAAGGATGACTTGCCGACGACTCGTTTTTGCTTTCATCAATATACGCATAATTAAGAAGAGATGAATCCGTTGGCAGGTTGTTCTT
GGCTACATTTTTC
dot-bracket secondary structure
..((..((((.(((((((((..(((((((((((..((((((((.(((....................))).))))))))...)))))))))))..)))))
)))).))))..))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
AAGATTGATGCAGCCAAGGATGACTTGCCGACGACTCGTTTTTGCTTTCATCAATATACGCATAATTAAGAAGAGATGAATCCGTTGGCAGGTTGTTCTT
GGCTACATTTTTC
dot-bracket secondary structure
..((..((((.(((((((((..(((((((((((..((((((((.(((....................))).))))))))...)))))))))))..)))))
)))).))))..))
SIMILARITIES| miRBase ptc-MIR169c: 0.000000000006 PMRD ptc-miR169b: 1e-59 microPC miR169: 5e-31 | UniProt no hits RFAM MIR169_2: 2e-58 |
Identical with: ptc-miR169b from PMRD (MNEST051659) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
