ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR171_2
source: miRBase, original name: ptc-MIR171m (MI0007033)
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGAGCCGAATCAATATCACT miRNA* TGGTATTGATCCGGCTCATC mismatches: 3 bulges: 0 |
pre-miRNA
GAAGCAGACATGGCGTGGTATTGATCCGGCTCATCTTCTGTATTTGCATCAGAAGTTCTTCGCTGAAGACGAGCCGAATCAATATCACTCTTGTACGCTT
C
dot-bracket secondary structure
(((((..(((.((.(((((((((((.((((((..((((((.........)))))).(((((...))))).)))))).))))))))))).)))))..))))
)
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
GAAGCAGACATGGCGTGGTATTGATCCGGCTCATCTTCTGTATTTGCATCAGAAGTTCTTCGCTGAAGACGAGCCGAATCAATATCACTCTTGTACGCTT
C
dot-bracket secondary structure
(((((..(((.((.(((((((((((.((((((..((((((.........)))))).(((((...))))).)))))).))))))))))).)))))..))))
)
SIMILARITIES| miRBase ptc-MIR171n: 8e-48 PMRD ptc-miR171m: 1e-52 microPC miR171: 0.000000000001 | UniProt no hits RFAM MIR171_2: 1e-46 |
Identical with: ptc-miR171m from PMRD (MNEST051696) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
