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ABOUT THIS RECORD
ID:
MNEST041525
species:
Solanum lycopersicum
miRNA family:
MIR157
source:
miRBase, original name:
sly-MIR156a
(
MI0009971
)
Taxonomy by NCBI:
Solanum lycopersicum
Lycopersicon
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGACAGAAGATAGAGAGCAC
miRNA*
GCTCTCTATGCTTCTGTCAT
mismatches:
1
bulges:
1
View larger
pre-miRNA
TTGACAGAAGATAGAGAGCAC
TAATGATGATATGCTAATTTCATTCAATTTGGGCAGCAAAAGCATCTCAATTCATTTGT
GCTCTCTATGCTTCTGTCAT
dot-bracket secondary structure
.((((((((((((((((((((
.((((((((.(((((.......(((.....))).......))))).)))..))))).))
))))))))).))))))))).
SIMILARITIES
miRBase
aly-MIR157d
:
0.0000000003
PMRD
sly-miR156a
:
5e-52
microPC
miR157
:
2e-51
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
deep sequencing data evidence
references
[
1
] Zhang J, Zeng R, Chen J, Liu X, Liao Q,
Gene. 423:1-7(2008).
,
"Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill"