ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: MIR157
source: miRBase, original name: sly-MIR156c (MI0009973)
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGAGCAC miRNA* GCTCTCATTCTTTTGTCAT mismatches: 3 bulges: 0 |
pre-miRNA
TTGACAGAAGATAGAGAGCACGAATAACGAGGTGCTAATTGGAACATGCACCTTAATTCTTTGTGCTCTCATTCTTTTGTCAT
dot-bracket secondary structure
.((((((((((..(((((((((((....(((((((............))))))).....)))))))))))..)))))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Zhang J, Zeng R, Chen J, Liu X, Liao Q, Gene. 423:1-7(2008)., "Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill"
TTGACAGAAGATAGAGAGCACGAATAACGAGGTGCTAATTGGAACATGCACCTTAATTCTTTGTGCTCTCATTCTTTTGTCAT
dot-bracket secondary structure
.((((((((((..(((((((((((....(((((((............))))))).....)))))))))))..)))))))))).
SIMILARITIES| miRBase sly-MIR156b: 3e-22 PMRD sly-miR156c: 6e-42 microPC miR157: 0.00006 | UniProt no hits RFAM no hits |
Identical with: sly-miR156c from PMRD (MNEST054534) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Zhang J, Zeng R, Chen J, Liu X, Liao Q, Gene. 423:1-7(2008)., "Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill"
