ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: MIR159
source: miRBase, original name: sly-MIR159 (MI0009974)
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCTA miRNA* GAGCTCCTTGAAGTCCAACAA mismatches: 3 bulges: 0 |
pre-miRNA
TGGAGCTCCTTGAAGTCCAACAAAAAATCTAACAGGTTAAATTGAGCTGCTGACCTATGGATTCCTCAGCCCTATCTATTTATGATTTCAAACATATAGA
TAGGTTTTGGGTTTGCATATGTCAGGAGCTTTATTTTACCCTTTGTTTGATCATTTTTTGGATTGAAGGGAGCTCTA
dot-bracket secondary structure
(((((((((((..(((((((.(((..(((.(((((((.((((.(((((.(((((.((((.(..(((.((.((((((((..((((........))))))))
)))).)).)))..).)))).))))).))))).)))).)))...)))).)))..))).)))))))..)))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Zhang J, Zeng R, Chen J, Liu X, Liao Q, Gene. 423:1-7(2008)., "Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill"
TGGAGCTCCTTGAAGTCCAACAAAAAATCTAACAGGTTAAATTGAGCTGCTGACCTATGGATTCCTCAGCCCTATCTATTTATGATTTCAAACATATAGA
TAGGTTTTGGGTTTGCATATGTCAGGAGCTTTATTTTACCCTTTGTTTGATCATTTTTTGGATTGAAGGGAGCTCTA
dot-bracket secondary structure
(((((((((((..(((((((.(((..(((.(((((((.((((.(((((.(((((.((((.(..(((.((.((((((((..((((........))))))))
)))).)).)))..).)))).))))).))))).)))).)))...)))).)))..))).)))))))..)))))))))))
SIMILARITIES| miRBase ptc-MIR159b: 0.0000000006 PMRD sly-miR159: 1e-97 microPC miR159: 2e-93 | UniProt no hits RFAM MIR159: 4e-85 |
Identical with: sly-miR159 from PMRD (MNEST054540) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Zhang J, Zeng R, Chen J, Liu X, Liao Q, Gene. 423:1-7(2008)., "Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill"
