ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: MIR160
source: miRBase, original name: sly-MIR160a (MI0008357)
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCGTATGAGGAGCCAAGCATA mismatches: 3 bulges: 0 |
pre-miRNA
CAAGTCGTGTACACGTATATGCCTGGCTCCCTGTATGCCATTTGCAAAGCTCACCGTAATATATCGATGGGCCTTGTTGAATGGCGTATGAGGAGCCAAG
CATATTCCGATATCGTGTATATGATGTTG
dot-bracket secondary structure
...((((((((((((.((((((.(((((((..(((((((((((((((.(((((.((........)).))))).))).))))))))))))..))))))).)
)))))........))))))))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T, Genome Res. 18:1602-1609(2008)., "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"
CAAGTCGTGTACACGTATATGCCTGGCTCCCTGTATGCCATTTGCAAAGCTCACCGTAATATATCGATGGGCCTTGTTGAATGGCGTATGAGGAGCCAAG
CATATTCCGATATCGTGTATATGATGTTG
dot-bracket secondary structure
...((((((((((((.((((((.(((((((..(((((((((((((((.(((((.((........)).))))).))).))))))))))))..))))))).)
)))))........))))))))))))....
SIMILARITIES| miRBase vvi-MIR160e: 0.0000000000004 PMRD sly-miR160a: 3e-69 microPC miR160: 0.000000002 | UniProt no hits RFAM mir-160: 5e-44 |
Identical with: sly-miR160a from PMRD (MNEST054541) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T, Genome Res. 18:1602-1609(2008)., "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"
