ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: MIR162
source: miRBase, original name: sly-MIR162 (MI0009975)
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCAG miRNA* GGAGGCAGCGGTACCATTGATC mismatches: 6 bulges: 1 |
pre-miRNA
CAGGAGGCAGCGGTACCATTGATCCGTTCCCTGGAAGCTGAATATATATATACGCAACATTACAGCAAAAGGAATCGGTCGATAAACCTCTGCATCCAG
dot-bracket secondary structure
..(((.((((.(((...(((((((.(((((......(((((((...............))).))))....))))).)))))))..))).)))).)))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
references
[1] Zhang J, Zeng R, Chen J, Liu X, Liao Q, Gene. 423:1-7(2008)., "Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill"
CAGGAGGCAGCGGTACCATTGATCCGTTCCCTGGAAGCTGAATATATATATACGCAACATTACAGCAAAAGGAATCGGTCGATAAACCTCTGCATCCAG
dot-bracket secondary structure
..(((.((((.(((...(((((((.(((((......(((((((...............))).))))....))))).)))))))..))).)))).)))..
SIMILARITIES| miRBase zma-MIR162: 0.000000001 PMRD sly-miR162: 2e-51 microPC miR162: 0.0000000000003 | UniProt no hits RFAM MIR162_2: 0.00000002 |
Identical with: sly-miR162 from PMRD (MNEST054542) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
references
[1] Zhang J, Zeng R, Chen J, Liu X, Liao Q, Gene. 423:1-7(2008)., "Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill"
