ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: MIR167
source: miRBase, original name: sly-MIR167 (MI0008360)
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GATCATGTGGCAGCCTTACC mismatches: 2 bulges: 1 |
pre-miRNA
TCGTGCAGCACTAGCAGTTGAAGCTGCCAGCATGATCTAAACTTTCCTTTTAGTTCAAATATAATTCGAGGAAAGATCAGATCATGTGGCAGCCTTACCT
GTCAATGCCATCACGA
dot-bracket secondary structure
(((((..(((.(..(((.(((.(((((((.((((((((...((((((((..((((.......)))).))))))))...))))))))))))))).))).))
)..).)))...)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Zhang J, Zeng R, Chen J, Liu X, Liao Q, Gene. 423:1-7(2008)., "Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill"
[2] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T, Genome Res. 18:1602-1609(2008)., "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"
TCGTGCAGCACTAGCAGTTGAAGCTGCCAGCATGATCTAAACTTTCCTTTTAGTTCAAATATAATTCGAGGAAAGATCAGATCATGTGGCAGCCTTACCT
GTCAATGCCATCACGA
dot-bracket secondary structure
(((((..(((.(..(((.(((.(((((((.((((((((...((((((((..((((.......)))).))))))))...))))))))))))))).))).))
)..).)))...)))))
SIMILARITIES| miRBase tcc-MIR167a: 0.0000000000001 PMRD sly-miR167: 2e-61 microPC miR167: 0.000000006 | UniProt no hits RFAM MIR167_1: 5e-53 |
Identical with: sly-miR167 from PMRD (MNEST054545) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Zhang J, Zeng R, Chen J, Liu X, Liao Q, Gene. 423:1-7(2008)., "Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill"
[2] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T, Genome Res. 18:1602-1609(2008)., "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"
