ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: MIR169
source: miRBase, original name: sly-MIR169b (MI0008362)
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTG miRNA* GGCAGTCTCCTTGGCTACC mismatches: 0 bulges: 2 |
pre-miRNA
TTTTAATTTGGTTTCAGGCAGTCTCCTTGGCTACCTTGACATGCTCTTTTCTTTTATGCAAGATATCTTTTCAAAATAGAAGTTTTAGTCATCGTTAAAA
TATCGAGACGGGGTTACAAGTCTTATTTAAAAGAAGAGAAGTCTAGCATGATGAGAAGAGTCTTATTTGGTAGCCAAGGATGACTTGCCTGCACCGTACT
TGAAA
dot-bracket secondary structure
.(((((..((((..(((((((((((((((((((((.......(((((((((..((((((.((((.(((((((......((.(((((((......))))))
).))(((((..(....)..)))))........))))))).)))).)))))).))))))))).......)))))))))))).))).)))))).))))...)
)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T, Genome Res. 18:1602-1609(2008)., "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"
TTTTAATTTGGTTTCAGGCAGTCTCCTTGGCTACCTTGACATGCTCTTTTCTTTTATGCAAGATATCTTTTCAAAATAGAAGTTTTAGTCATCGTTAAAA
TATCGAGACGGGGTTACAAGTCTTATTTAAAAGAAGAGAAGTCTAGCATGATGAGAAGAGTCTTATTTGGTAGCCAAGGATGACTTGCCTGCACCGTACT
TGAAA
dot-bracket secondary structure
.(((((..((((..(((((((((((((((((((((.......(((((((((..((((((.((((.(((((((......((.(((((((......))))))
).))(((((..(....)..)))))........))))))).)))).)))))).))))))))).......)))))))))))).))).)))))).))))...)
)))).
SIMILARITIES| miRBase ghb-MIR169a: 0.0000000000002 PMRD sly-miR169b: 3e-114 microPC miR169: 0.0002 | UniProt no hits RFAM MIR169_5: 0.00000000005 |
Identical with: sly-miR169b from PMRD (MNEST054548) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T, Genome Res. 18:1602-1609(2008)., "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"
