ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: MIR171
source: miRBase, original name: sly-MIR171b (MI0008366)
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATCACG miRNA* AGATATTGGTGCGGTTCAATT mismatches: 3 bulges: 0 |
pre-miRNA
ACGAGATATTGGTGCGGTTCAATTAGAAAGCGCACTTCTTTATATATAGAACTTCGTTATTTAATTGAGCCGTGCCAATATCACGT
dot-bracket secondary structure
(((.((((((((..(((((((((((((.((((...((((........))))...)))).)))))))))))))..)))))))).)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T, Genome Res. 18:1602-1609(2008)., "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"
ACGAGATATTGGTGCGGTTCAATTAGAAAGCGCACTTCTTTATATATAGAACTTCGTTATTTAATTGAGCCGTGCCAATATCACGT
dot-bracket secondary structure
(((.((((((((..(((((((((((((.((((...((((........))))...)))).)))))))))))))..)))))))).)))
SIMILARITIES| miRBase aqc-MIR171f: 0.00000000007 PMRD sly-miR171b: 1e-43 microPC miR171: 0.000004 | UniProt no hits RFAM MIR171_1: 2e-42 |
Identical with: sly-miR171b from PMRD (MNEST054552) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T, Genome Res. 18:1602-1609(2008)., "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"
